Contents
spike_times_unit
SpikeData
RateData
RateSliceStack
SpikeSliceStack
get_sttc()
swap()
randomize()
trough_between()
ensure_h5py()
times_from_ms()
to_ms()
extract_waveforms()
check_neuron_attributes()
get_channels_for_unit()
compute_avg_waveform()
get_valid_spike_times()
waveforms_by_channel()
extract_unit_waveforms()
consecutive_durations()
gplvm_state_entropy()
gplvm_continuity_prob()
gplvm_average_state_probability()
shuffle_z_score()
shuffle_percentile()
slice_trend()
slice_stability()
linear_regression()
pairwise_tests()
paired_test()
omnibus_test()
plot_distribution()
plot_pvalue_matrix()
plot_scatter()
plot_scatter_with_marginals()
plot_manifold()
plot_lines()
plot_percentile_bands()
plot_burst_sensitivity()
plot_aligned_slice_single_unit()
plot_heatmap()
plot_recording()
plot_spatial_network()
load_spikedata_from_hdf5()
load_spikedata_from_hdf5_raw_thresholded()
load_spikedata_from_nwb()
load_spikedata_from_kilosort()
load_spikedata_from_spikeinterface()
load_spikedata_from_spikeinterface_recording()
load_spikedata_from_pickle()
load_spikedata_from_ibl()
query_ibl_probes()
load_spikedata_from_spikelab_sorted_npz()
export_spikedata_to_hdf5()
export_spikedata_to_nwb()
export_spikedata_to_kilosort()
export_to_pickle()
is_s3_url()
parse_s3_url()
download_from_s3()
upload_to_s3()
ensure_local_file()
AnalysisWorkspace
LazyAnalysisWorkspace
WorkspaceManager
get_workspace_manager()
curate_by_min_spikes()
curate_by_firing_rate()
curate_by_isi_violations()
curate_by_snr()
curate_by_std_norm()
compute_waveform_metrics()
curate()
build_curation_history()
curate_by_merge_duplicates()
main()
This section covers installing SpikeLab and walking through a first analysis.